selbioinfonivedi-web/g4_ews_pipeline

G4-WATCH is a research framework for evaluating whether G-quadruplex loci behave differently from matched controls over viral evolutionary history, and—only if the evidence gate is open—producing surveillance scores. Its main workflow constructs an atlas, processes sequence data through QC, alignment and phylogenetic analysis, tests locus-control differences, then conditionally scores and reports. It also provides a separate operator console and a read-only dashboard/workstation. Pipeline stages and web boundaries follow the README; unsampled stage internals are represented only where their role is documented.