How rmp-deb/dstatree works
dstatree is an R utility for filtering D-statistic result tables against a rooted species tree. The documented workflow loads a tree and table into a DStatFilter object, filters topology-inconsistent trios and adjusts for multiple testing, then reports significant signals involving true sister pairs or saves results. The README supports these capabilities and method calls; no source excerpts were provided, so internal implementation details and unshown call relationships are omitted.
Main entry points: DStatFilter.R DStatFilter
Components 8
Analysis inputs
- Rooted species tree
- D-statistic table
Filtering
- DStatFilter
R/DStatFilter.R - Topology filtering
R/DStatFilter.R - Multiple-testing adjustment
R/DStatFilter.R
Results
- Sister-pair signals
R/DStatFilter.R - Saved result table
Other components
- Analyst
Connections 12
- Analyst → DStatFilter: creates
README.md - Analyst → Rooted species tree: provides
README.md - Analyst → D-statistic table: provides
README.md - DStatFilter → Rooted species tree: loads
README.md - DStatFilter → D-statistic table: loads
README.md - Analyst → DStatFilter: calls filter
README.md - DStatFilter → Topology filtering: filters trios
README.md - DStatFilter → Multiple-testing adjustment: adjusts tests
README.md - Analyst → DStatFilter: requests sister signals
README.md - DStatFilter → Sister-pair signals: reports
README.md - Analyst → DStatFilter: calls saveResult
README.md - DStatFilter → Saved result table: saves
README.md