How philippemichel/baseph works
baseph is an R package of utilities for small clinical studies. An analyst can use its standalone helpers for randomization, formatting, data preparation, and sample-size estimation, and its chart functions to visualize clinical data; it also provides example datasets and a few table-formatting/export helpers. The README documents capabilities but no calls between package functions, so the graph shows analyst-to-feature use rather than an invented internal pipeline. No source excerpts were available; paths and relationships below rely on the repository tree and README.
Main entry points: listrandph.R Randomization lists · beaup.R P-value formatting · bmiph.R BMI categories · debph.R Analysis setup
Components 28
Clinical helpers
- Randomization lists
R/listrandph.R - P-value formatting
R/beaup.R - BMI categories
R/bmiph.R - Analysis setup
R/debph.R - CI number display
R/bicph.R - Multiple responses
R/multirep.R - Other utilities
R/bashaut.R - Mean confidence interval
R/moyciph.R - Means
R/moys.R - Angle transforms
R/transang.R - Other statistics
R/nesp.R
Clinical charts
- Bar CI chart
R/barconfph.R - Simple bar chart
R/barsimpleph.R - Descending bar chart
R/bardecph.R - Binary bar chart
R/barouiph.R - Violin boxplot
R/vioboxph.R - Raincloud chart
R/raincloudph.R - Lollipop chart
R/lollipopph.R - P-value annotation
R/figp.R - Multiple histograms
R/histmultiph.R - Other charts
R/bardeuxph.R
Tables and export
- Table formatting
R/tabph.R - Table export
R/expk.R - Table graph export
R/gexpk.R
Data and planning
- Sample size
R/nbobsph.R - Patient dataset
R/patients.R - Variable labels
R/bnom.R
Other components
- Clinical analyst
Connections 20
- Clinical analyst → Randomization lists: creates lists
README.md - Clinical analyst → P-value formatting: formats p-values
README.md - Clinical analyst → BMI categories: bins BMI
README.md - Clinical analyst → Analysis setup: prepares analysis
README.md - Clinical analyst → CI number display: formats CI
README.md - Clinical analyst → Multiple responses: summarizes responses
README.md - Clinical analyst → Bar CI chart: plots data
README.md - Clinical analyst → Simple bar chart: plots data
README.md - Clinical analyst → Descending bar chart: plots data
README.md - Clinical analyst → Binary bar chart: plots data
README.md - Clinical analyst → Violin boxplot: plots data
README.md - Clinical analyst → Raincloud chart: plots data
README.md - Clinical analyst → Lollipop chart: plots data
README.md - Clinical analyst → P-value annotation: annotates figures
README.md - Clinical analyst → Table formatting: formats tables
README.md - Clinical analyst → Table export: exports tables
README.md - Clinical analyst → Table graph export: exports tables
README.md - Clinical analyst → Sample size: estimates subjects
README.md - Clinical analyst → Patient dataset: uses example data
README.md - Clinical analyst → Variable labels: uses labels
README.md