mark-costin/thesis-draft-1

How mark-costin/thesis-draft-1 works

This is a clinical platform with a Streamlit interface and Flask API. Its main user journey is role-based login, then patient intake and risk assessment or clinician review and consultation; administrators manage accounts. The API gateway mounts authentication, doctor, admin, prediction, and health endpoints, with ORM-backed persistence and shared security controls. The README describes longitudinal CDSS and clinical reporting, but the sampled excerpts do not establish their full runtime wiring; those capabilities are represented without asserting unsupported calls. The graph focuses on product runtime, not sample or test files.

Main entry points: rest.py REST gateway · auth0.py Authentication · docpage.py Clinician workspace · admin.py Admin endpoints

Components 27

Clinical workspaces

Workspace router frontend/main.py
Login and signup frontend/views/login.py
Patient portal frontend/views/patientpage.py
Clinician workspace frontend/views/docpage.py
Admin portal frontend/views/adminpage.py
Workspace styling frontend/views/styles.py
API client frontend/api_client.py

API gateway

REST gateway backend/rest.py
Authentication backend/routes/auth0.py
Doctor endpoints backend/routes/doctor.py
Admin endpoints backend/routes/admin.py
Risk inference endpoints backend/routes/predictions.py
Health diagnostics backend/routes/health.py

Identity and safeguards

Role authorization backend/middleware/rbac.py
Replay protection backend/middleware/idempotency.py
Response sanitization backend/middleware/sanitizer.py
Security headers backend/middleware/security.py

Clinical services

CDSS engine backend/model_orm/cdss_engine.py
Clinical records backend/model_orm/clinic_orm.py
Baseline records backend/model_orm/baseline_orm.py
Clinical vectors backend/model_orm/clinical_vector.py

Data layer

SQLAlchemy connection backend/dbconnect.py
User accounts backend/model_orm/usr_orm.py
Patient profiles backend/model_orm/pat_orm.py
Doctor profiles backend/model_orm/doc_orm.py
Admin profiles backend/model_orm/adm_orm.py

Other components

Platform user

Connections 47

Platform user → Workspace router: uses README.md
Workspace router → Login and signup: routes to README.md
Workspace router → Patient portal: routes to README.md
Workspace router → Clinician workspace: routes to README.md
Workspace router → Admin portal: routes to README.md
Patient portal → Workspace styling: uses README.md
Clinician workspace → Workspace styling: uses frontend/views/docpage.py
Platform user → Login and signup: submits credentials README.md
Login and signup → API client: requests authentication
Patient portal → API client: requests assessment
Clinician workspace → API client: requests clinical data
Admin portal → API client: requests administration
API client → REST gateway: calls API
REST gateway → Authentication: registers backend/rest.py
REST gateway → Doctor endpoints: registers backend/rest.py
REST gateway → Admin endpoints: registers backend/rest.py
REST gateway → Risk inference endpoints: registers backend/rest.py
REST gateway → Health diagnostics: registers backend/rest.py
REST gateway → Security headers: initializes backend/rest.py
Authentication → User accounts: queries and updates backend/routes/auth0.py
Authentication → Patient profiles: creates and reads backend/routes/auth0.py
Authentication → Doctor profiles: reads profiles backend/routes/auth0.py
Authentication → Admin profiles: reads profiles backend/routes/auth0.py
Authentication → Role authorization: protects logout backend/routes/auth0.py
Authentication → Response sanitization: sanitizes output backend/routes/auth0.py
Doctor endpoints → Role authorization: protects routes backend/routes/doctor.py
Doctor endpoints → Replay protection: guards consultation backend/routes/doctor.py
Doctor endpoints → Patient profiles: reads records backend/routes/doctor.py
Doctor endpoints → Response sanitization: sanitizes output backend/routes/doctor.py
Admin endpoints → Role authorization: protects routes backend/routes/admin.py
Admin endpoints → Replay protection: guards provisioning backend/routes/admin.py
Admin endpoints → User accounts: queries accounts backend/routes/admin.py
Admin endpoints → Doctor profiles: provisions clinicians backend/routes/admin.py
Admin endpoints → Response sanitization: sanitizes output backend/routes/admin.py
Risk inference endpoints → Role authorization: protects inference backend/routes/predictions.py
Risk inference endpoints → Response sanitization: sanitizes output backend/routes/predictions.py
Health diagnostics → SQLAlchemy connection: checks connectivity backend/routes/health.py
Health diagnostics → Replay protection: tests replay guard backend/routes/health.py
SQLAlchemy connection → User accounts: backs ORM models backend/model_orm/usr_orm.py
SQLAlchemy connection → Patient profiles: backs ORM models backend/model_orm/pat_orm.py
SQLAlchemy connection → Doctor profiles: backs ORM models backend/model_orm/doc_orm.py
SQLAlchemy connection → Admin profiles: backs ORM models backend/model_orm/adm_orm.py
SQLAlchemy connection → Replay protection: provides raw connection backend/middleware/idempotency.py
Clinician workspace → CDSS engine: supports CDSS workflow README.md
Clinician workspace → Clinical records: supports clinical records README.md
Clinician workspace → Baseline records: supports longitudinal baseline README.md
CDSS engine → Clinical vectors: uses vectors

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Drawn by GitDiagram on September 30, 2026 from the repository's file tree, README and source files. Read as Markdown ·