How imperialchepi/healthgps-examples works
This repository is a collection of Health-GPS example model configurations and supporting parameter data, not the simulator itself. The intended workflow is to select a model directory and run it with the separate Health-GPS console program; sample result CSVs are also included. The README documents HPC job submission, while the available source index contains no R-script excerpts, so links involving those generators or specific configuration internals are omitted.
Main entry points: HLM_France France HLM · HLM_India India HLM · Dummy_disease_test Dummy disease · KevinHall_FINCH FINCH model
Components 16
Example models
- France HLM
HLM_France - India HLM
HLM_India - Dummy disease
Dummy_disease_test - FINCH model
KevinHall_FINCH - India scenarios
KevinHall_India - PIF scenarios
KevinHall_PIF
Parameter generators
- Factor means
R/FactorsMeanGenerator.R - Height and weight
R/HeightWeight.R - Nutrient parameters
R/NutrientParamGenerator.R - Activity parameters
R/PhysicalActivityParam.R - Policy parameters
R/PolicyParamGenerator.R - Quantiles
R/QuantilesGenerator.R - Region and ethnicity
R/Region_Ethnicity.R
Sample outputs
- France run results
HLM_France_results-50sims
Other components
- Model user
- Health-GPS console
Connections 7
- Model user → Health-GPS console: runs separately
README.md - Health-GPS console → France HLM: uses configuration
README.md - Health-GPS console → India HLM: uses configuration
- Health-GPS console → Dummy disease: uses configuration
- Health-GPS console → FINCH model: uses configuration
- Health-GPS console → India scenarios: uses configuration
- Health-GPS console → PIF scenarios: uses configuration